For Engineers

CliqueMS annotates using in-source fragments

CliqueMS turns an old foe, in-source fragmentation, into a friend to build similarity networks for annotation

Collaborative MS Analysis with the GNPS Dashboard

How the GNPS Dashboard improves collaboration from a web browser

Using matchms and Omigami with GNPS

How to use Cosine distance and Spec2Vec to compare spectra

Automatically find parameters with AutoTuner

AutoTuner is a new Bioconductor package that quickly and accurately computes preprocessing parameters for your MS2 metabolomics data

Avoiding the Metabolomics Valley of Death

Developing metabolomics tools with doctors in mind

GNPS with Python

How to download, understand, clean, and analyze the GNPS JSON dataset

CANOPUS for Better Class Prediction

A unique machine learning strategy allows you to annotate each spectrum in an MS2 experiment with high accuracy on the chemical class level

Improved Molecular Networking

How Feature-Based and Ion Identity Molecular Networking improve the accuracy of GNPS molecular networks

MLOps Engineering Tools We Use

What software does our team use to keep knocking down the efficiency barriers?

Understanding Dask Architecture

A high level introduction to Dask

Production ML on Open MLOps: Omigami

How we built Omigami: A scalable machine learning tool for metabolomic researchers

MetaClean Automates Peak Quality Assessments

Leverage machine learning to detect poor quality integrations and save hours assessing peaks manually

Introduction to Dask

Grokking the internals of Dask

MS2DeepScore: Predict structural similarity

Predict structure similarity from MS/MS spectra directly with a deep learning model.

Working as an ML engineer

What it’s like to be part of our team and why it might be different from what you expect

Experiment Tracking with MLFlow

Properly tracking your machine learning experiments is easier than you think.

Visualize Metabolite Annotations with MolNetEnhancer

A new tool to smartly enrich molecular networks with metabolite annotations from different sources

Spec2Vec mass spectral similarity

Spec2Vec uses an unsupervised machine learning model to predict structural similarity from MS/MS mass spectra.

Choosing a Feature Store

FEAST is the only standalone open-source feature store, but you have some other options too.

What We Love About Prefect

It’s Open Source, plays nicely with Kubernetes, and there’s a great community

LC/MS Annotations with Binner

A novel approach to feature annotation

Kubeflow: Is It Ready for Production?

Why we abandoned Kubeflow in our machine learning architecture

Machine Learning to Detect Bowel Cancer

Insights from Nathan Wan

Feature Selection in Untargeted Metabolomics

How to not overfit your models and get less false positives

ML Platforms: Dataiku vs. Alteryx vs. Sagemaker v.s. ...

Comparing machine learning platforms

Streamlit vs. Dash vs. Shiny vs. Voila

Comparing data dashboarding tools and frameworks

Airflow vs. Luigi vs. Argo vs ..

Choosing a task orchestration tool

Scaling Pandas: Comparing Dask, Ray, Modin Vaex, and RAPIDS

How can you process more data quicker?

How to Build Production Ready ReCo Engines

How to deal with unseen data, optimise response times, and update models frequently.

Scaling Machine Learning Pipelines

How to parallelize and distribute your Python machine learning pipelines with Luigi, Docker, and Kubernetes

Better spectral prediction and metabolite ID with CFM-ID 4.0

CliqueMS annotates using in-source fragments

Collaborative MS Analysis with the GNPS Dashboard

Using matchms and Omigami with GNPS

Automatically find parameters with AutoTuner

Avoiding the Metabolomics Valley of Death

GNPS with Python

CANOPUS for Better Class Prediction

Improved Molecular Networking

MLOps Engineering Tools We Use

Understanding Dask Architecture

Production ML on Open MLOps: Omigami

MetaClean Automates Peak Quality Assessments

Introduction to Dask

MS2DeepScore: Predict structural similarity

Working as an ML engineer

Experiment Tracking with MLFlow

Visualize Metabolite Annotations with MolNetEnhancer

Spec2Vec mass spectral similarity

Choosing a Feature Store

What We Love About Prefect

LC/MS Annotations with Binner

Kubeflow: Is It Ready for Production?

Machine Learning to Detect Bowel Cancer

Feature Selection in Untargeted Metabolomics

ML Platforms: Dataiku vs. Alteryx vs. Sagemaker v.s. ...

Streamlit vs. Dash vs. Shiny vs. Voila

Airflow vs. Luigi vs. Argo vs ..

Scaling Pandas: Comparing Dask, Ray, Modin Vaex, and RAPIDS

How to Build Production Ready ReCo Engines

Scaling Machine Learning Pipelines

Talk to us about how machine learning can transform your business.

For Engineers

Better spectral prediction and metabolite ID with CFM-ID 4.0

CliqueMS annotates using in-source fragments

Collaborative MS Analysis with the GNPS Dashboard

Using matchms and Omigami with GNPS

Automatically find parameters with AutoTuner

Avoiding the Metabolomics Valley of Death

GNPS with Python

CANOPUS for Better Class Prediction

Improved Molecular Networking

MLOps Engineering Tools We Use

Understanding Dask Architecture

Production ML on Open MLOps: Omigami

MetaClean Automates Peak Quality Assessments

Introduction to Dask

MS2DeepScore: Predict structural similarity

Working as an ML engineer

Experiment Tracking with MLFlow

Visualize Metabolite Annotations with MolNetEnhancer

Spec2Vec mass spectral similarity

Choosing a Feature Store

What We Love About Prefect

LC/MS Annotations with Binner

Kubeflow: Is It Ready for Production?

Machine Learning to Detect Bowel Cancer

Feature Selection in Untargeted Metabolomics

ML Platforms: Dataiku vs. Alteryx vs. Sagemaker v.s. ...

Streamlit vs. Dash vs. Shiny vs. Voila

Airflow vs. Luigi vs. Argo vs ..

Scaling Pandas: Comparing Dask, Ray, Modin Vaex, and RAPIDS

How to Build Production Ready ReCo Engines

Scaling Machine Learning Pipelines

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Talk to us about how machine learning can transform your business.